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Amazon EMR and Amazon EMR clusters or spot instances running on Amazon Linux do not require access to S3 buckets.
To download packages from a single repository, specify the repository-id parameter.
To download multiple packages from an Amazon Linux repository, specify the repository-id parameter and specify a list of repository IDs.
To download packages from a single repository, specify the repository-id parameter and specify the repository-name parameter.
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To download packages from the repository-id and repository-name parameters, specify the name of a repository in the repository-id and repository-name parameters.
The following example shows how to download packages from an Amazon Linux repository. The only difference is that the repository-id and repository-name parameters must be specified.
If you are using the Public IAM role to allow access, then you can simply use the aws commandline tool to download the packages. aws allows you to specify thebucket name and the download filename.
$ aws s3 cp example/my_awesome_package.deb my_package.deb
To allow a user to download packages to a repository on an Amazon Elastic Compute Cloudinstance, edit the instance's IAM policy and add the following permissions to the s3:ListBucket action:
To demonstrate the use of PageMan for multiple experiments, Arabidopsis cold stress experiments were downloaded from NASC Arrays [3] and evaluated. The RMA expression values for the samples were calculated [20] and a linear model was fitted using BioConductor [15, 21]. The resulting log2 fold change values at each time point were calculated and used for PageMan. The data was processed in PageMan using ORA analysis with Fisher's exact test, setting a threshold of 1 (at least a two fold change).
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